A QNAP firmware update should be routine — but many systems reboot into a sudden and alarming condition:
one or more disks show as “Missing,” even though the disks are fully healthy.

This is not a physical failure.
This is a controller-level identity conflict caused by metadata drift during the reboot sequence. And in most cases, your data is still intact — the controller is hiding the disk to prevent corruption.


QNAP updates modify RAID drivers, kernel modules, and system partitions.
During reboot, the NAS re-validates:

  • drive identity
  • slot order
  • metadata epochs
  • backplane maps
  • NVRAM signatures

If anything does not match the pre-update state, the controller refuses to present the member.


Even when disks spin up normally, QNAP may detect mismatches between:

  • pre-update metadata
  • post-update controller memory
  • slot topology
  • array signatures

Rather than risk writing bad parity, QNAP simply marks the disk as Missing.


Typical triggers:

  • stale epochs
  • partial metadata commits
  • controller NVRAM preserved from pre-update
  • disks presenting updated headers
  • QNAP kernel modules interpreting signatures differently

The firmware chooses safety: hide the VD rather than allow destructive writes.


  • Disk shows as Missing, Not Present, or Foreign
  • RAID Group enters Degraded or Read-Only
  • Storage Pool disappears
  • Shared folders show as empty
  • System event log reports:
    • “Metadata mismatch”
    • “Foreign disk detected”
    • “Drive not part of RAID group”
    • “Unrecognized array structure”

Re-inserting or forcing drives back online can destroy the only valid layout

Drives are typically fine

Parity is usually intact

Metadata disagreement, not mechanical failure, prevents access

Arrays are often fully recoverable if metadata is preserved

Diagnostic Overview

  • Controller: QNAP NAS (QTS / QuTS Hero)
  • Observed State: Disk Missing immediately after firmware update
  • Likely Cause: Metadata drift during update, slot identity mismatch, or partial epoch commit
  • Do NOT: Remove/reinsert drives, force-add disks, initialize RAID groups, or run Repair
  • Recommended Action: Clone all disks; capture system logs; validate member order offline; rebuild array mapping from images

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